I have a 1987 YJ with a 4.2 my son and I were working on it and inadvertantly left teh key on and ran down the battery. I put the charger on it and set the timer and left the shop, the timer did not time down and it charged for about 30 hours. This melted the ignition module but before I found and replaced that I put in a new pick up in the distributor, plugs, plug wires, coil, rotor and cap. While I had the distributor out replacing the pickup I got the motor out of time. I have timed the motor with a timing light and am certain it is in time. Now it will start and idle and sound ok but the longer it runs the worse it gets it mill start to miss and then die. It will even backfire through the carb and tailpipe as if it was still out of time. It was running just fine before the charger mishap...any suggestions?