What do you mean internals?
First off, the D44 was a late model year option, early "97" tj's which were manufactured with 96 build dates and early 97, the D44 was not an option, it was added mid-year, late year 97 to the TJ model as an option only for sports and sahara's. the amount of 97's that actually got the d44 was limited, so it is generally assumed that 98 was the first year for them.
if your re-gearing, at a minimum, you will need a ring and pinion set for the front and for the rear, as well as master install kits for each. depending on what gear ration you had, and what you're going to, you may also have to get a new carrier.
edit, just saw you only want to replace the spider gears or trac lock or something something.